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medInria Documentation


Below is a list of the documentation topics as well as a selection of video tutorials and demos also available on our youtube channel.



  • Introduction and Installation
    • What is medInria? 
    • What can be done with medInria?
    • What are plugins?
    • Requirements and installation instructions for
      • Mac OS X
      • Linux (Ubuntu and Fedora)
      • Windows

  • Launching medInria  
    • Home Page
    • Quick Access Menu
    • Short description of Browser Area
    • What is each configuration for in a few words
      • Visualization 
      • Diffusion
      • Registration
      • Segmentation
      • Filtering


  • Browser Area 
    • What is it for?
    • Source Selector
    • File System
      • What is import, view, load and index?
      • Which image formats can be read?
      • How to save temporary loaded data to the database?
      • How to bookmark a location?
    • What is the database viewer?
      • How to remove?
      • How to export?
      • How to filter?
    • DICOM data source
      • SCU configuration
      • Server configuration
      • Importing from DICOM services to the local database
    • SHANOIR data source
    • Importing composite DTI data


  • Visualization Workspace  
    • Overview and it's components
    • Layout toolbox
    • View Properties toolbox
    • View's annotations and controls
    • 2D controls
    • 3D controls
    • 4D controls


  • Diffusion Workspace  
    • Overview, what can be done?
    • Tensor view toolbox
    • Fiber view toolbox
    • Tractography
    • Fiber bundling toolbox


  • Registration Workspace  
    • Overview, what can be done?
    • Compare and Fuse layouts
    • How to run a registration algorithm



  • Segmentation Workspace
    • Overview of the workspace
    • Configuration layout
    • Principles
    • Painting toolbox
    • Exporting the mask



  • Modifying the settings
    • Startup tab
    • Database tab
      • How to move the database?
    • System tab
    • Advanced settings management