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TOPIC: Segmentation fault (core dumped)

Segmentation fault (core dumped) 2 years 9 months ago #885

  • anshuhim20
  • anshuhim20's Avatar
am using medinria on REDHAT 7.2 version of linux

I am successfully able to use the "Diffusion" option for the purpose of tracking fibers.

But when I tried to use the option "Segmentation" :-
On loading either FIXED of MOVING image to the window, the Window of the software gets closed always with the error "Segmentation fault (core dumped)"

the terminal provides the message as shown below
Version: 2.2.3
Database opened at: "/home/JPJ/.local/share/data/inria/medInria/db"
Loading plugin : "animaDataMCMImagePlugin"
Loading plugin : "animaDenseBMRegistrationPlugin"
Loading plugin : "animaNonLocalMeansFilterPlugin"
Loading plugin : "animaPyramidalBMRegistrationPlugin"
Loading plugin : "animaRelaxometryPlugin"
Loading plugin : "animaSymmetryPlanePlugin"
Loading plugin : "itkDataDiffusionGradientListPlugin"
Loading plugin : "itkDataImagePlugin"
Loading plugin : "itkDataSHImagePlugin"
Loading plugin : "itkDataTensorImagePlugin"
Loading plugin : "itkFiltersPlugin"
Loading plugin : "itkINRDataImageReaderPlugin"
Loading plugin : "itkINRDataImageWriterPlugin"
Loading plugin : "itkProcessRegistrationBalooPlugin"
Loading plugin : "itkProcessRegistrationDiffeomorphicDemonsPlugin"
Loading plugin : "itkProcessRegistrationILogDemonsPlugin"
Loading plugin : "itkProcessRegistrationOptimusPlugin"
Loading plugin : "itkProcessRegistrationSuperBalooPlugin"
Loading plugin : "itkProcessTensorLogEuclideanPlugin"
Loading plugin : "LCCLogDemonsPlugin"
Loading plugin : "segmentationPlugin"
Loading plugin : "medVtkFibersDataPlugin"
Loading plugin : "medVtkViewPlugin"
Loading plugin : "qtdcmDataSourcePlugin"
Loading plugin : "qtshanoirDataSourcePlugin"
Loading plugin : "undoRedoRegistrationPlugin"
Loading plugin : "vtkDataMeshPlugin"
Unable to find a valid implementation of the store scp service.
factory creates dataSource: "qtshanoirDataSource"
factory creates dataSource: "qtdcmDataSource"
medDatabaseNonPersistentImporter created with uuid: "{4421cb69-ab93-442b-996d-bce24d9c978a}"
W: DcmItem: Length of element (0300,cfec) is odd
E: DcmElement: Unknown Tag & Data (0300,cfec) larger (1631734449) than remaining bytes in file
W: DcmItem: Dataset not in ascending tag order, at element (0300,cfec)
constructing medAbstractData:
constructing medAbstractImageData
constructing medAbstractDataTypeImage
Image map contains 1 files
deleting medAbstractDataTypeImage
deleting medAbstractImageData
deleting data with index "-1 | -1 | -1 | -1 | -1"
W: DcmItem: Length of element (0300,cfec) is odd
E: DcmElement: Unknown Tag & Data (0300,cfec) larger (1631734449) than remaining bytes in file
W: DcmItem: Dataset not in ascending tag order, at element (0300,cfec)
constructing medAbstractData:
constructing medAbstractImageData
constructing medAbstractDataTypeImage
constructing medAbstractData:
constructing medAbstractData:
deleting a view
deleting a view. done
deleting a view
deleting a view. done
medDataManager we found an existing instance of that object 3
Attempt to add twice the same data to the view: "medVtkView"
medDataManager we found an existing instance of that object 3
medDatabaseNonPersistentImporter created with uuid: "{7278f11c-90ed-47f7-be54-e13d22c7ed5e}"
W: DcmItem: Length of element (0300,bda4) is odd
E: DcmElement: Unknown Tag & Data (0300,bda4) larger (4184182905) than remaining bytes in file
W: DcmItem: Dataset not in ascending tag order, at element (0300,bda4)
constructing medAbstractData:
constructing medAbstractImageData
constructing medAbstractDataTypeImage
Image map contains 1 files
deleting medAbstractDataTypeImage
deleting medAbstractImageData
deleting data with index "-1 | -1 | -1 | -1 | -1"
W: DcmItem: Length of element (0300,bda4) is odd
E: DcmElement: Unknown Tag & Data (0300,bda4) larger (4184182905) than remaining bytes in file
W: DcmItem: Dataset not in ascending tag order, at element (0300,bda4)
constructing medAbstractData:
constructing medAbstractImageData
constructing medAbstractDataTypeImage
SequenceDuration 64
SequenceFrameRate 1.01562
deleting a view
deleting a view. done
deleting a view
deleting a view. done
SequenceDuration 64
SequenceFrameRate 1.01562
medDataManager we found an existing instance of that object 3
Attempt to add twice the same data to the view: "medVtkView"
medDataManager we found an existing instance of that object 3
Attempt to add twice the same data to the view: "medVtkView"
medDataManager we found an existing instance of that object 3
medDataManager we found an existing instance of that object 3
deleting vtkDataManager
deleting vtkDataManager
deleting vtkDataManager
deleting vtkDataManager
medDataManager we found an existing instance of that object 3
SequenceDuration 64
SequenceFrameRate 1.01562
medDataManager we found an existing instance of that object 4
Attempt to add twice the same data to the view: "medVtkView"
medDataManager we found an existing instance of that object 4
SequenceDuration 64
SequenceFrameRate 1.01562
medDataManager we found an existing instance of that object 5
Attempt to add twice the same data to the view: "medVtkView"
medDataManager we found an existing instance of that object 5
constructing medAbstractData:
constructing medAbstractImageData
constructing medAbstractDataTypeImage
constructing medAbstractData:
constructing medAbstractImageData
constructing medAbstractDataTypeImage
Segmentation fault (core dumped)


Kindly suggest the needful to get rid of the error mentioned above

Looking forward to hear from the experts

Regards

Himanshu Joshi
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